PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03852.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 196aa    MW: 21691.8 Da    PI: 5.0841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03852.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-193382255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++ a++kl+g
  Rsa1.0_03852.1_g00003.1 33 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSREAALAYDSAARKLYG 82
                             69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.39E-303292No hitNo description
PfamPF008474.2E-143382IPR001471AP2/ERF domain
SMARTSM003802.0E-343396IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-213392IPR016177DNA-binding domain
PROSITE profilePS5103221.9833390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-303391IPR001471AP2/ERF domain
PRINTSPR003676.6E-103445IPR001471AP2/ERF domain
PRINTSPR003676.6E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMVGANKKQR AVNASSRKGC MRGKGGPENA SCTYKGVRQR TWGKWVAEIR EPNRGARLWL  60
GTFDTSREAA LAYDSAARKL YGPEAHLNLP ESLRSYPETT SPGPQVSQTP SSNTGEKSSE  120
ESPSSSNEMS SWGTRSEISW EHMNVDLPVT DDSSIWEEAT MSLGFPWVHE GDDDFSLFNS  180
CISDGYSNWD SFHSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173495668ATERF1
3gcc_A1e-173495668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03852.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064341e-163AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237541e-163AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAK1191321e-163AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08.
GenBankAK1759021e-163AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24.
GenBankCP0026841e-163CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444504.11e-144PREDICTED: dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-114DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A397YQE11e-134A0A397YQE1_BRACM; Uncharacterized protein
TrEMBLM4CHR91e-134M4CHR9_BRARP; Uncharacterized protein
STRINGBra003752.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-110ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]