PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03817.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 252aa    MW: 28950.1 Da    PI: 5.6635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03817.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07127172555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  Rsa1.0_03817.1_g00003.1 127 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 172
                              567889******************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-11120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.728122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-10125182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-5127172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-4144175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDCLSHFFNW DPPIQLQDCF IPDMDMVIPE TDSFFFQTXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX SSYHCNTHTH TQFPNPNLDF LPEASVFPEF RVQDFPLVLK AGLGDQDGAK  120
KPKLSSQSMA ARERRRRIAE KTHELTKLIP GGQKLNTAEM FQAAAKYVKF LQSQVGILQM  180
MQTTKKTQGI TDVEIETQFL LESQAVQEKL STKEVCLVPC EMVRDLTSED SIWRNPKISR  240
EINKLLSTDL AN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03817.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896551e-125AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475518.11e-114PREDICTED: transcription factor bHLH53-like
SwissprotQ84RD01e-80BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A0D3B4Y11e-110A0A0D3B4Y1_BRAOL; Uncharacterized protein
STRINGBo3g028090.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]