PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03813.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 164aa    MW: 18368.6 Da    PI: 9.9023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03813.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2050100356
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +kGVr+++ +g+++AeIrdp++ g  +r++lg++ taeeAa+a+++a+ kl+g+
  Rsa1.0_03813.1_g00002.1  50 FKGVRRRP-WGKYAAEIRDPNKHG--ARIWLGTYETAEEAAAAYDRAAFKLRGA 100
                              8*******.**********95544..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3449113IPR001471AP2/ERF domain
CDDcd000182.25E-1449109No hitNo description
PROSITE profilePS5103223.89449107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3149108IPR001471AP2/ERF domain
PRINTSPR003674.3E-105061IPR001471AP2/ERF domain
PfamPF008474.7E-145099IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2350108IPR016177DNA-binding domain
PRINTSPR003674.3E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MQQDLTSYDC SSALDSIRRH LLEDDSESLS SFSSSSSPDL EPTSRRGGNF KGVRRRPWGK  60
YAAEIRDPNK HGARIWLGTY ETAEEAAAAY DRAAFKLRGA KAKLNFPHLI GIDGPEPSRI  120
TKRRLSSPVS CSPVARRRNT DIINLTARVP CLAFRYFYNI DSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2846107263ATERF1
3gcc_A6e-2846107263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03813.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466862.11e-116PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404761e-37ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A0D3DZH93e-90A0A0D3DZH9_BRAOL; Uncharacterized protein
STRINGBo8g118250.14e-91(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-26ethylene-responsive element binding factor 13