PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03774.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 332aa    MW: 36791 Da    PI: 6.7861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03774.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10172219455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Rsa1.0_03774.1_g00002.1 172 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 219
                              8**************************....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17166237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-11166223No hitNo description
PROSITE profilePS5088815.624168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18168237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7172219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKQTLKYLP LGQSDPFGNN DNGNGNVNEG TIGDLLLGRF CNPQDISPQS FSPGIRFPPY  60
PGQFGSDPDS NKSSSLLDPD SDRFQTPKPN SRKRKSIPVP VGNGKESPAS SSLTASHSKM  120
SGENVVSKDG KRSKHDEAGS SKKVIDKCDD SKDDAKKDYI HVRARRGQAT DSHSLAERAR  180
REKISERMTM LQDLVPGCNR ITGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRMEFNA  240
NAALSTEMIQ PGESLTQSLY AMACSEQRLL RHMPRYSDTQ FPSSDGFVQA ETPGFWENDL  300
QSIVQMGFGD IQQQHSNNNN CSEPTLQMKL EP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03774.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654411e-124AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965361e-124AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440038.10.0PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK481e-175BH077_ARATH; Transcription factor bHLH77
TrEMBLM4EHS00.0M4EHS0_BRARP; Uncharacterized protein
STRINGBra028335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-149bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]