PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03727.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 217aa    MW: 24251.3 Da    PI: 4.4186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03727.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19555155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++y+GVr +k +g+WvAeIr p++   r r++lg+f tae+Aa+a +aa  +l+g
  Rsa1.0_03727.1_g00004.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFETAEKAARAFDAALYCLRG 55
                             79*****999.**********933...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-11555IPR001471AP2/ERF domain
CDDcd000184.30E-28565No hitNo description
SMARTSM003801.0E-30669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-30664IPR001471AP2/ERF domain
PROSITE profilePS5103221.918663IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-21664IPR016177DNA-binding domain
PRINTSPR003679.3E-10718IPR001471AP2/ERF domain
PRINTSPR003679.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDAPPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFETAE KAARAFDAAL YCLRGPGARF  60
NFPDNPPEIP GGRSLTPQQI QVVASRFACE EALPPQQQQQ QEAPSSPRGD KTEDGGGISA  120
RGDISGGSGG PTSGQVGEDN NNHEDNSNDT TTYWPFLWEE NHVVPTTSEE FGTFFMDDDS  180
TNLYTQHQHQ LSSDSYYDGA YVVEDDLSHY NINLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03727.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409773e-88AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898833e-88AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608663e-88AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115773e-88BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122433e-88BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026883e-88CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469468.11e-163PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-107ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A398A7L61e-131A0A398A7L6_BRACM; Uncharacterized protein
STRINGBo2g023630.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-84ERF family protein