PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03623.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 294aa    MW: 33392.3 Da    PI: 9.4862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03623.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-1528120197
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                              ffk++  +d +++++  +p +f+++  ++   s  ++++++ g sWevk+  + +++  y+ ++GW++Fv++n L +++ v+F+++
  Rsa1.0_03623.1_g00003.1  28 FFKIFQGEDLSAESMRAFPYDFIRNVPQD-DFSSNMVIRTQCGLSWEVKV--SMNPCFyYMEKRGWNQFVNDNALGDKELVTFTHT 110
                              8999999999*************888444.36679***************..999999566669********************99 PP

                              SSSEE..EEEEE CS
                       B3  86 grsefelvvkvf 97 
                              g ++f  +v ++
  Rsa1.0_03623.1_g00003.1 111 GLMCF--NVNIY 120
                              88999..66665 PP

2B344.92e-142062841495
                              T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                               +l +p+ faeeh ++  +sk +t+ +++g  sWev +    ++++ ++++GW   +++  L +gD++ Fkl++ +ef+l+v+
  Rsa1.0_03623.1_g00003.1 206 FLLPIPRYFAEEHISN--QSKRVTIHHSDGnCSWEVLC--LVRKRKATFSSGWATLAREYPLSVGDICAFKLIKPTEFQLLVT 284
                              4589*********766..77889999999989******..666667889************************9999998885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-1522123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1524124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-1327120No hitNo description
SMARTSM010193.3E-1528123IPR003340B3 DNA binding domain
PfamPF023623.0E-1328120IPR003340B3 DNA binding domain
PROSITE profilePS5086311.60328123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-19189284IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-19189285IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.362193287IPR003340B3 DNA binding domain
CDDcd100172.82E-11193283No hitNo description
SMARTSM010193.1E-13195287IPR003340B3 DNA binding domain
PfamPF023626.8E-12200283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMFPKERERG SSSGLGQGGE VDVENLSFFK IFQGEDLSAE SMRAFPYDFI RNVPQDDFSS  60
NMVIRTQCGL SWEVKVSMNP CFYYMEKRGW NQFVNDNALG DKELVTFTHT GLMCFNVNIY  120
EENGKEVVTP RRRPRTMASL SGIKKEAGKS SNKDVKKAEK TGDKLKSKRC EGGETSKKKK  180
KKMKSNNVEH TVPVFSVTLT ASYLKFLLPI PRYFAEEHIS NQSKRVTIHH SDGNCSWEVL  240
CLVRKRKATF SSGWATLARE YPLSVGDICA FKLIKPTEFQ LLVTGKVVEE IMTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135PRRRPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399925.11e-99hypothetical protein EUTSA_v10015617mg
SwissprotQ9LSP68e-88Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLM4DPI91e-159M4DPI9_BRARP; Uncharacterized protein
STRINGBra018430.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-86B3 family protein