PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03598.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 256aa    MW: 29106.3 Da    PI: 6.4025
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03598.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.58.9e-2091140255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  Rsa1.0_03598.1_g00002.1  91 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAAIAYDEAALKFKG 140
                              7********.**********93....36************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-3390149IPR001471AP2/ERF domain
PfamPF008472.4E-1391140IPR001471AP2/ERF domain
SMARTSM003807.5E-3791154IPR001471AP2/ERF domain
PROSITE profilePS5103224.84391148IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2291149IPR016177DNA-binding domain
CDDcd000181.31E-2191149No hitNo description
PRINTSPR003672.2E-1192103IPR001471AP2/ERF domain
PRINTSPR003672.2E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MANRRNYGKS PFRADESEKK EAEDEENIFP FFSDQSQYDT RAMVSALTQV IGNQSNTHDN  60
TYQHHPDKYN QQDPSQHVPP KQDQGNSSKR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT  120
FETAEAAAIA YDEAALKFKG SKAKLNFPER AQLASNNSST ITGLPNYYSS NNQVYYSNPQ  180
TIPYDNQYYY NQYLQQGGNS NDTLSYSMAG EETGGLMYNH QTLSTTNSSA SDGSSRQQEE  240
YTRFLHFGDS SPYSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2690150162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03598.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937411e-179AB493741.1 Arabidopsis thaliana At5g07310 mRNA for hypothetical protein, partial cds, clone: RAAt5g07310.
GenBankAY5608851e-179AY560885.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g07310) mRNA, complete cds.
GenBankBT0257171e-179BT025717.1 Arabidopsis thaliana At5g07310 mRNA, complete cds.
GenBankDQ6532681e-179DQ653268.1 Arabidopsis thaliana clone 0000012872_0000009284 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469262.10.0PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9LY291e-119EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLA0A078FLX31e-131A0A078FLX3_BRANA; BnaC02g01680D protein
TrEMBLA0A3P6CVJ41e-131A0A3P6CVJ4_BRAOL; Uncharacterized protein
STRINGBo2g008570.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.19e-88ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development.
    Nucleic Acids Res., 2016. 44(3): p. 1271-84
    [PMID:26721386]
  4. Zhang Y, et al.
    TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance.
    Plant Physiol., 2016. 171(1): p. 483-93
    [PMID:26969721]
  5. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]