PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03487.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 249aa    MW: 27839.1 Da    PI: 7.8696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03487.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1897147255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ a eAa+a+++a+ +l+g
  Rsa1.0_03487.1_g00003.1  97 HYRGVRRRP-WGKYAAEIRDP---NkKGSRIWLGTYDRAVEAARAYDQAAFQLRG 147
                              7********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-3196155IPR001471AP2/ERF domain
SMARTSM003806.7E-3697161IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2397157IPR016177DNA-binding domain
PROSITE profilePS5103224.13197155IPR001471AP2/ERF domain
PfamPF008471.4E-1297147IPR001471AP2/ERF domain
CDDcd000185.95E-2997155No hitNo description
PRINTSPR003673.2E-1398109IPR001471AP2/ERF domain
PRINTSPR003673.2E-13137157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MATKQESLAI EFISQHLLTD FSSIETKPSS YTLHETGPSL YTTQLHDFQF ETSPRTINNQ  60
THKPNSTLNR RKPPLPNLSV SRTVSGTVKK TEEEERHYRG VRRRPWGKYA AEIRDPNKKG  120
SRIWLGTYDR AVEAARAYDQ AAFQLRGRKA ILNFPLDVRA TSESFLEEGV TGKRKRVKSS  180
PAVEEDEKAV AARVKVEEEE SDATEAEVEA VPLTPSSWMG FWDVGAGDGI FSVPPLSPTS  240
PNFSVISVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2696158466ATERF1
3gcc_A2e-2696158466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03487.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478171.10.0PREDICTED: ethylene-responsive transcription factor ERF104
SwissprotQ9FKG11e-120EF104_ARATH; Ethylene-responsive transcription factor ERF104
TrEMBLM4D8X81e-157M4D8X8_BRARP; Uncharacterized protein
STRINGBra012938.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134641828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-115ethylene response factor 104
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]