PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03463.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 308aa    MW: 35901.7 Da    PI: 10.3224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03463.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-1721100994
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                              +v k  +  lp +f+++ + ++  s +++++ e+g sWev +  +k+++  y+ ++GW++Fv++n L e++fv+F+++g ++f   
  Rsa1.0_03463.1_g00002.1  21 YVQK--QRALPYDFMQNLS-DNDLSYKMVIRAEWGSSWEVDI--SKNPKFyYMEKSGWNQFVSDNALGENEFVTFTHTGLMRF--D 99 
                              4444..459******5554.456999****************..******566669********************9887777..4 PP

                              E CS
                       B3  94 v 94 
                              v
  Rsa1.0_03463.1_g00002.1 100 V 100
                              4 PP

2B333.85.8e-112192981395
                              TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              ++ l lp+ f  eh   + esk+ t+ + ++  sW+v +    + +r+v+++GW + +++  Lk+gD ++Fkl++ +ef l  k
  Rsa1.0_03463.1_g00002.1 219 LKFLLLPRVFEVEHI--TSESKEYTIHHwKRKCSWNVLC--LVRENRTVFSSGWCRLAREFPLKVGDRCTFKLIKPTEFVLITK 298
                              456888999966664..457789999998999*******..888888**************************99888855544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-1611110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.49211106IPR003340B3 DNA binding domain
SMARTSM010192.8E-1511106IPR003340B3 DNA binding domain
CDDcd100171.26E-1212104No hitNo description
PfamPF023624.0E-151598IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-1617107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-12203296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15205296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.729207301IPR003340B3 DNA binding domain
CDDcd100171.31E-6208291No hitNo description
SMARTSM010194.4E-6210300IPR003340B3 DNA binding domain
PfamPF023621.7E-9219299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MIRCERFETL AFKLTVFHSL YVQKQRALPY DFMQNLSDND LSYKMVIRAE WGSSWEVDIS  60
KNPKFYYMEK SGWNQFVSDN ALGENEFVTF THTGLMRFDV NIYNPDGKEI VTPRKPPPTT  120
PFSGIKKKEG ESSYKDVKKE DETCESVEGV ELEATKKKAE ASKSKTSKKK KSKKVVSYVG  180
VGEPSRGRKK KAEKLKTFKK KKIKKGVPEF EITIRKSYLK FLLLPRVFEV EHITSESKEY  240
TIHHWKRKCS WNVLCLVREN RTVFSSGWCR LAREFPLKVG DRCTFKLIKP TEFVLITKKS  300
RKEITVIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194GRKKKAEKL
2187201RKKKAEKLKTFKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893482e-90AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693077.11e-145PREDICTED: B3 domain-containing protein At3g17010-like
SwissprotQ9LSP62e-94Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A078E3E41e-138A0A078E3E4_BRANA; BnaC05g36420D protein
STRINGBra022189.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.13e-87B3 family protein