PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03128.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 213aa    MW: 24749.4 Da    PI: 10.2266
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03128.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12123164351
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                               +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  Rsa1.0_03128.1_g00001.1 123 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 164
                              79**96.5.7*********6.....6********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.453111177IPR001471AP2/ERF domain
SMARTSM003803.6E-7122179IPR001471AP2/ERF domain
PfamPF008471.6E-6122165IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-9123167IPR016177DNA-binding domain
CDDcd000182.12E-12124175No hitNo description
Gene3DG3DSA:3.30.730.109.3E-9124169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNG VAAYSPVPKE EKTPIVEGSR  60
SQRQRTPSKY LMQFRSDSSA ISPDDYGSIS PKLEQDVCDS DQPLKRRKRH RRKQVKNQEP  120
CLMRGVYYKN MKWQAAIKVE KRQIHLGTFS SQEEAARLYD RAAFMCGREP NFELSEEDKR  180
KLKQQSWEGF LACTRRKIIN KKPKRRVEQE ELE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03128.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336902e-98AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451857.11e-158PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451859.11e-158PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451860.11e-158PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
RefseqXP_018451861.11e-158PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
SwissprotQ56XP97e-88ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A078IFC51e-124A0A078IFC5_BRANA; BnaC08g08940D protein
TrEMBLA0A0D3DLF61e-124A0A0D3DLF6_BRAOL; Uncharacterized protein
STRINGBo8g033910.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.17e-82ERF family protein