PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03055.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 383aa    MW: 42784.7 Da    PI: 7.8453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03055.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27208267259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK+ k ++ prsYYrC+++ +Cpv+k+v+r+ ++d+++  +tYeg+H+h+
  Rsa1.0_03055.1_g00001.1 208 NDGCQWRKYGQKTAKTNPLPRSYYRCSMStNCPVRKQVQRCgEDDTSAYMTTYEGNHDHP 267
                              8***************************99**********934578899**********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-28193269IPR003657WRKY domain
PROSITE profilePS5081124.627202269IPR003657WRKY domain
SuperFamilySSF1182901.96E-24204269IPR003657WRKY domain
SMARTSM007748.0E-34207268IPR003657WRKY domain
PfamPF031062.1E-25208267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIKEETSSCV HPSDGVMAES DKEVELGATK AKLDKVKEEN EKLKLLLSTV LAEYSSLQMH  60
LSNVVRQQHE ASTKLDGNGH EDLDVDISLR LGRSEQKISK EEEEVKKIIA ENISIEKKKG  120
SEKKRSAYGL GFRIQSFEDP NTERTMKLDY LFREVKNKDV ENKCLSSRKD FKTARNEDHH  180
EVLEGHEQPG LKKTRVCVKA PCDDPSINDG CQWRKYGQKT AKTNPLPRSY YRCSMSTNCP  240
VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQTGS SSSSSLSHFF  300
PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSARPSS SKSHTLSFSG  360
LKSQAPFNTY SNLSHKTRLS GQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-182072691474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03055.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300520.0KF430052.1 Brassica rapa WRKY transcription factor 36 (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468146.10.0PREDICTED: probable WRKY transcription factor 36
SwissprotQ9CAR41e-166WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBLM4CUI90.0M4CUI9_BRARP; Uncharacterized protein
TrEMBLV5RH130.0V5RH13_BRACM; WRKY transcription factor 36
STRINGBra007884.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139131825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69810.11e-119WRKY DNA-binding protein 36
Publications ? help Back to Top
  1. Yang Y, et al.
    UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis.
    Nat Plants, 2018. 4(2): p. 98-107
    [PMID:29379156]