PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02982.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 337aa    MW: 38434.7 Da    PI: 6.4074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02982.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14133179354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Rsa1.0_02982.1_g00002.1 133 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 179
                              79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-4133182No hitNo description
PfamPF000101.1E-11133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14134189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLHLHPQ NLPWSSLPSI DPTHFPSNPT RYSDPVHYFN  60
KRASSSSSSF DNTDGFVSPP LDNHYHHQNH LRILSEALGP IMRRGPSFGF DGEIMGKMSA  120
QEVMDAKALA ASKSHSEAER RRRERINTHL AKLRSILPNT TKTDKASLLA EVIQHMKELK  180
RQTSLITETC QVPTESDDLT VDSTYNDEEG NLVIRASFCC GDRTDLIHDV INALKSLHLR  240
TLKAEIATVG GRVKNVLFLS RDDHEDDGFE YRNDAVEHDD EEKRYNRVSS IEEALKAVIE  300
KCVNNNDENN DNNNLEKSSS GSIKRQRTSK MANRCYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595350.10.0PREDICTED: transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A0D3DAU00.0A0A0D3DAU0_BRAOL; Uncharacterized protein
STRINGAT3G25710.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32