PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02937.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 27857.6 Da    PI: 7.6128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02937.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-1069115354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h+e+ErrRR+riNs +++Lr +l  +      K +Ka+ L k+v+ +k+L
  Rsa1.0_02937.1_g00007.1  69 RNHKEAERRRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115
                              58***********************997.....7************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.53866115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1269127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1269129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-972121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00318156221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQPETSDQML YSFLTGNELS GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA  60
QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTL  120
EISDSDQTLL PSETDEISVL HYGDYSDDGH IIFKASLCCD DRSDLMPDIM EILKSLHMKT  180
LRAEISTLGG RTRSVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RSSGGGERSK  240
RRRALDHIIM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17479ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02937.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478749.10.0PREDICTED: transcription factor bHLH106
SwissprotO806741e-148BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1J3GMC51e-161A0A1J3GMC5_NOCCA; Uncharacterized protein
STRINGBra016951.1-P1e-159(Brassica rapa)
STRINGBo4g190700.11e-159(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-131bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]