PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02903.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 264aa    MW: 29901.8 Da    PI: 9.0027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02903.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001398119323
                              ETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                              C+ C+++++++ +L  Hi+  H
  Rsa1.0_02903.1_g00003.1  98 CSVCSRVYPTSRLLSIHISEaH 119
                              ******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0766994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM00355696119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003550.057134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MAMEMAVDAA GELGFPYWNP LRRRFPPDSL FFASGNVERE LLAKQVALDL TEDEINNLQI  60
IVDTESRRIS CPIAGCSERL KSLDSFEDHY KARHTAACSV CSRVYPTSRL LSIHISEAHD  120
SFFQAKVARG YDMYECLVEG CGLKFKNYKA RHRHLADKHK FPTTFEFFKR TQLSKKRREK  180
LQRQRVPKLK HEEDKEDASS DAMEVEDKAS LDGLVSALST LTTSDTTPSN VSFGRRHGRG  240
LTFVPRSVHR EKSTNSSSAP GPKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02903.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937480.0AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473704.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A397ZTB31e-178A0A397ZTB3_BRACM; Uncharacterized protein
STRINGXP_010420037.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-165zinc ion binding;nucleic acid binding;zinc ion binding