PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02711.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 147aa    MW: 16558.7 Da    PI: 5.7027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02711.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-0638781055
                             HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             + R d++ ++++ L++l+ +      +K + a++L +A++YI+ Lq
  Rsa1.0_02711.1_g00005.1 38 KERKDKVGERISALQQLVSPY-----GKTDTASVLLEAMQYIQFLQ 78
                             67889999***********99.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-102887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6422877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-43683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-123691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-63882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEYSRDSAGM MMEHKRSVCS LEENSIKRHK SDLSFSSKER KDKVGERISA LQQLVSPYGK  60
TDTASVLLEA MQYIQFLQEQ VKVLSAPYLQ TTSITTNDEE LEEYSLRSRG LCLVPMEYTV  120
GVAQTNGADI WAPVKSPTFN HQSNSSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726229.18e-93PREDICTED: transcription factor bHLH113-like
SwissprotQ9LT672e-35BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A078HCK69e-93A0A078HCK6_BRANA; BnaC04g12910D protein
STRINGBra005644.1-P2e-84(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.11e-83bHLH family protein