PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02710.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 338aa    MW: 36997.2 Da    PI: 5.7894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02710.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10171218455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Rsa1.0_02710.1_g00004.1 171 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 218
                              8**************************....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17165237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-11165222No hitNo description
Gene3DG3DSA:4.10.280.103.1E-17167236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7171218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MENESIKYLP LGQSDPFGNE GTIGDLLGRF CNNNPPQEIS LISPAGIRFP PYPGGHFGSD  60
QLTGQDSNKS SLLDPPDSDH RVQTPKPNSR KRKSIPVSVS GGNGKDSPAS SSLTASNSKV  120
SGGEIVGSKR SKQDEAGSSK NVIDNKDDAK PPEPPKDYIH VRARRGQATD SHSLAERARR  180
EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT INPRMEFNPN  240
AALSTEMIQP GESLTQSLYA MACSEQRLPS GYYSLAKNMP RFSDTQFPSS DGFVQAEPQG  300
FWENDLQSVV QMGFGDVQQQ SSNNNSCSEP TLQMKLEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00376DAPTransfer from AT3G23690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02710.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0654411e-179AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBankAY0965361e-179AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432853.10.0PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK480.0BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A0D3D5D30.0A0A0D3D5D3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E9G20.0A0A3P6E9G2_BRAOL; Uncharacterized protein
STRINGBo7g039150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-157bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]