PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02651.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 335aa    MW: 36922.1 Da    PI: 6.5154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02651.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10207255355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_02651.1_g00006.1 207 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 255
                              58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.43E-11202259No hitNo description
SuperFamilySSF474594.45E-17202271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17205272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7207255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGGESNEGEM GFKHGDDESG ISRVGVTSMP LYAKADHFFS SADWDPVVSG GGGFSSSHYT  60
SMGLDNPGMS CFPHYQPGSG YPDMPASLLP FGDCGGGGQF LGSDKKGGSV GRLIRAGESH  120
EDLHQVSDDA VLGASLTRKR RQLEAESSQR NKKAVEEFQE DPQRGSDHQS QKKQKNDQSK  180
EKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL VPGCNKITGK  240
AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNIDIDRIL AKDLLQSRDR NTPMLGLNPY  300
SGFEGTMPNL STTTNPQYNP LPQASNGRKQ HIICF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141TRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02651.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218060.0AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankBT0126550.0BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435098.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_018435099.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLR0I6X00.0R0I6X0_9BRAS; Uncharacterized protein
STRINGCagra.4395s0200.1.p0.0(Capsella grandiflora)
STRINGXP_006305146.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]