PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02648.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 237aa    MW: 26455.5 Da    PI: 7.0801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02648.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000132976152
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                             +r ++  rEr  R+++N+ f eL + l  +    ++   Ka++L +A++++k
  Rsa1.0_02648.1_g00005.1 29 KRINKAVRERLKREQLNDLFIELADSLELN----QQNSGKASVLCEATRFLK 76
                             689999*********************997....344556667777776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.20E-52677No hitNo description
SuperFamilySSF474591.02E-102792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-72897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2872878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSKTPSTST HEANAPPVDE RSRKGKVPKR INKAVRERLK REQLNDLFIE LADSLELNQQ  60
NSGKASVLCE ATRFLKDVFS QIESLRKEHT SLLSESNYVT TEKNELKEET SVLETEISRL  120
QSEIEARVNQ SKPDLNTSPA PEYNHHHHHH YQQHAELASQ FSGLPIFQGA GFQQSSAAAP  180
PHPGPTVLVL PMQPDVQTQA PLMYNNSSNV SKPCPRYASA ADSWPSRLLG ERLKANE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02648.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485546.11e-165PREDICTED: transcription factor bHLH47
RefseqXP_018485547.11e-165PREDICTED: transcription factor bHLH47
SwissprotQ9SN741e-122BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A397YZ231e-143A0A397YZ23_BRACM; Uncharacterized protein
TrEMBLM4DSL61e-143M4DSL6_BRARP; Uncharacterized protein
STRINGBra019509.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117202331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-115bHLH family protein
Publications ? help Back to Top
  1. Rodríguez-Celma J, et al.
    The transcriptional response of Arabidopsis leaves to Fe deficiency.
    Front Plant Sci, 2013. 4: p. 276
    [PMID:23888164]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  4. Li H,Wang L,Yang ZM
    Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
    Gene, 2015. 554(1): p. 16-24
    [PMID:25300251]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]