PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02623.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 461aa    MW: 50112.4 Da    PI: 6.6791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02623.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-063523901154
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Rsa1.0_02623.1_g00004.1 352 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 390
                              5778999***********98.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-11351404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-6351395No hitNo description
Gene3DG3DSA:4.10.280.101.1E-9355399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHEDH HSLATEHHLQ  60
MIGLGLSSQS PVDQWNQSLL RGDSKAETSF GVMLQENLNL DANSKANANT TSSTTSYQLQ  120
ESDSSHNQAL WRDPHINNND FKPQLNMTSS NRGFFSDHHQ FSPHGSSSTD SSTVTCQGFS  180
IDNSTNTMYG TSTTPNSSSA MFHQHQGAGY SLPGSSDQQP SRNHQQSNLG YSQFGSSTGN  240
YEQIATALPS TWFLRSSPPK PHSPLRFSNN ATFWNPAATA GNLGPTQHDA SSNFFPALQP  300
PQIHQPSFDE QTKSISEVRD SSSGEVKRGG GDQPAAKKAK SEAASPSPAF KVRKEKMGDR  360
IAALQQLVSP FGKTDAASVL SEAIEYIKFL HQQVSALSNP YMKSGASLHH QQSDHPKELD  420
VSEEPDLRSR GLCLVPVSST FPVTHDTAVD FWTPTFGGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614574.10.0PREDICTED: transcription factor bHLH123-like isoform X1
RefseqXP_009145606.10.0PREDICTED: transcription factor bHLH123 isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2ZTA40.0A0A0D2ZTA4_BRAOL; Uncharacterized protein
TrEMBLM4F3W10.0M4F3W1_BRARP; Uncharacterized protein
STRINGBra035761.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein