PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02584.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 179aa    MW: 20531.9 Da    PI: 9.6345
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02584.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.3e-4161136277
                              -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                      SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                              Cqv++C+++l++ak+y+rrhkvCevh+ka++++v+g ++rfCqqCsrfhel efDe+krsCrrrLa+hnerrrk +
  Rsa1.0_02584.1_g00008.1  61 CQVDRCTSNLTDAKQYYRRHKVCEVHAKASAATVAGAKRRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKIS 136
                              *************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3156122IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.13758135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-3760137IPR004333Transcription factor, SBP-box
PfamPF031106.8E-3161134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MERSQGWSYV KDKAIVSNHA EQEWENGMDE EEEDGGDEDK RKGVMERARG TNTDRGPSRL  60
CQVDRCTSNL TDAKQYYRRH KVCEVHAKAS AATVAGAKRR FCQQCSRFHE LPEFDEAKRS  120
CRRRLAGHNE RRRKISGDGC GEGAGRRGLS GQLIQTQERN RVDMKLPMTN SSFKRPQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3859134984squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0037141e-169BT003714.1 Arabidopsis thaliana At3g15270 mRNA, complete cds.
GenBankAK1186111e-169AK118611.1 Arabidopsis thaliana At3g15270 mRNA for squamosa promoter binding protein-like 5, putative, complete cds, clone: RAFL19-86-N19.
GenBankAJ2429601e-169AJ242960.1 Arabidopsis thaliana mRNA for Squamosa promoter binding protein-like 5, (SPL5 gene).
GenBankAJ0116101e-169AJ011610.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675932.11e-109PREDICTED: squamosa promoter-binding-like protein 5
SwissprotQ9S7585e-98SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A078G6791e-109A0A078G679_BRANA; BnaA01g28740D protein
STRINGBra021094.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.17e-74squamosa promoter binding protein-like 5