PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02528.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 311aa    MW: 33142.9 Da    PI: 5.7318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02528.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11122167555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  Rsa1.0_02528.1_g00003.1 122 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 167
                              99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.46E-12115171No hitNo description
SuperFamilySSF474597.98E-17115176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16119176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-9122167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVEEAKEEGR RQKAEEMGNE NGERKGEFIN QNNDFFLDSM SMLSSLPPCW DSSLPPPHPH  60
PPPPHSSTVD ASFPDQFHQP QESGGPSQDG LQGQGTVSTT SAPVARQKPR VRARRGQATD  120
PHSIAERLRR ERIAERMKSL QELVPNTNKT DKASMLDEII EYVRFLQLQV KVLSMSRLGG  180
AGAVGPRLNG LTSEVGGRLD ALSGPCNSLN GKGNATGSSN ESLRSTENRV AKLMEEDMGS  240
AMQYLQGKGL CLMPISLATA MSSTSNPSRG ALFNPNNSNV VAAAAAAEAN VAAATAPEDS  300
SAMDDVSASK A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02528.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469763.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9LSQ31e-167BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A2L2BIN50.0A0A2L2BIN5_BRACI; LJRHL1-like 3-like 2 (Fragment)
STRINGA0A087GBT21e-167(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-135LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]