PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02362.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 313aa    MW: 32825.9 Da    PI: 6.8034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02362.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.8e-09158202554
                              HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Rsa1.0_02362.1_g00004.1 158 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 202
                              99***********************55......9**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASNNNPHGN LSDQTPSDDF FDQILGLPNF SASSSDGGLG GGGGGGAPPM MLQLGSGEEG  60
SHMGGGGLGV GGSGPTGFHN QMFPLGLSLD QGKGHGFLRP EGGGGGHGSV NRSSSSSSMK  120
GPVFHGQPMQ QPAPAAPHQP TSIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV  180
PTVNKTDRAA MIDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDMPLS SSVEDETSDG  240
GRTPQPAWEK WSNDGTERQV AKLMEENVGA AMQLLQSKAL CMMPISLAMA IYHSQPPDTS  300
SVVKPETNPP PPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02362.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527650.0AK352765.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-G01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462142.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-169UNE12_ARATH; Transcription factor UNE12
TrEMBLM4C9J30.0M4C9J3_BRARP; Uncharacterized protein
STRINGBra000872.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]