PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02351.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 547aa    MW: 59361.5 Da    PI: 5.9255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02351.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12375420454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Rsa1.0_02351.1_g00002.1 375 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 420
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-3951198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111371420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-14374424No hitNo description
SuperFamilySSF474591.44E-17374441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10375420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-18375441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-16377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MNLWTTDDNA SMMEAFMSSA DMSALWQSET ATAPAPAPAM EIPAGFSQET LQQRLQALIE  60
GTQEGWTYAI FWQPSYDFSG ASVLGWGDGY YKGEEDKGKT KQRSSPPPFS TPADQEYRKK  120
SFACGAGLAG RAFSTANPVW VSGSDQLSGS GCERAKQGGV FGIQTIACIP SANGVVELGS  180
TEKIRQSSDL VNKVRMLFNL DGGAGLSWNL DPDQGENDPS MWINDPIGAP EPDNGAPSSS  240
SQPFSKPIQF EIGGNSSTVT ENPNPIPKFN NDNSRELNFS TSSTSTLVKK PRAGEILSFG  300
DEGKRCSINP DPTSYSGQTQ KRKKSLGLTD DKVLSFGGGE SDHSDLEASV VKEVPEKRPK  360
KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL  420
KSKVTKTESE KAQIKNQLEE VKSELAGRKA SAGGDLSTSS SVTAVKPVGM EIEVKIIGWD  480
GMIRVESSKR NHPAARLMSA LMDLELEVNH ASMSVVNDLM IQQATVKMGF RIYTQEQLRA  540
SLISKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-4311944227Transcription factor MYC3
4ywc_A4e-4311944227Transcription factor MYC3
4ywc_B4e-4311944227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356364KRPKKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238030.0EF423803.1 Brassica oleracea var. gemmifera MYC mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735805.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLM4D1290.0M4D129_BRARP; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein