PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02309.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 284aa    MW: 32086.6 Da    PI: 4.4679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02309.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10135182454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++  rEr RR+++N++f  L ++l +    + +K +K +iL  A++ +++L
  Rsa1.0_02309.1_g00005.1 135 TKACRERLRREKLNEKFMDLSSVLEPG---RTPKTDKPAILDDAIRVLNQL 182
                              5678**********************8...8*****************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.557131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-8135185No hitNo description
PfamPF000101.6E-7135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-13137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-11139204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYPSLDDDDF VSDFFCFDQS NGAELDDYTQ FGVDLQPDQA DTFPDFGSYG VNLQNDPEQV  60
FSIGDLTSYN GVLAQEPGQF RNFGGPNDCG TVREDVVVVN SGSSGGPVKQ EQEHVDEECS  120
RKRGRTGSCV RPGGTKACRE RLRREKLNEK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN  180
QLRDEAHELE ETNQKLLEEI KSLKAEKNEL REEKQALKAE KEKTEQQLKS MMVPSTGFMP  240
QIPTPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00102PBMTransfer from AT4G14410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532960.0AK353296.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637415.10.0PREDICTED: transcription factor bHLH104 isoform X2
RefseqXP_013678511.10.0transcription factor bHLH104-like isoform X2
RefseqXP_013686728.10.0transcription factor bHLH104-like isoform X2
SwissprotQ8L4671e-167BH104_ARATH; Transcription factor bHLH104
TrEMBLA0A078FEH20.0A0A078FEH2_BRANA; BnaC04g28710D protein
STRINGBra041033.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14410.11e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  3. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  4. Wang C,Yao X,Yu D,Liang G
    Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana.
    Planta, 2017. 246(3): p. 421-431
    [PMID:28451750]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  7. Min JH, et al.
    A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis.
    Plant Physiol. Biochem., 2019. 136: p. 34-42
    [PMID:30639920]