PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02246.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 447aa    MW: 50387.2 Da    PI: 8.9321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02246.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH59.46.1e-19309355455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++     +K +Ka+iLe+A++Y+ksLq
  Rsa1.0_02246.1_g00005.1 309 VHNLSERRRRDRINERMKALQELIPHC-----TKTDKASILEEAIDYLKSLQ 355
                              6**************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-21303363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088819.244305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-21308378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-11308359No hitNo description
PfamPF000102.7E-16309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-19311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSQNLPRGVR SERLLYCCAY RIIISLAGIS FLFMILSLSV CTKRKTREQV TGKRRFCSFC  60
LAWNFNFHKS GLDVLLLQLL IRPEAFQIWP QDDLVELLWR DGQVVQQSQT HRDQTQKQDY  120
QQETLRPNTF LEDQETVSWI QYPLDEDPFE SEDLTSPFFS TIDLLQRPAS ETAKHDASPK  180
PPDQVMPPPK FRLTDSSSEV RELGKEQYSV VTVGPSHCGS NQSQTVLDGS LRAIDGRPYP  240
NASSSSGGSS GCSFGKNNKD MACVRRFTAE RKRKHIMDTD ESVSQSDAIG NNKSSLRTGS  300
TRRSRAAEVH NLSERRRRDR INERMKALQE LIPHCTKTDK ASILEEAIDY LKSLQLQVQV  360
MWMGSGMAAA AAAPIMFPGV QPPPPFIRQV QSPVLLPRFP VMNRYVGLFP QMQAAASQPM  420
EMLRFGSSAG QESQRTSAQT KTTDGTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313318ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133562.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_009133563.10.0PREDICTED: transcription factor PIF4-like
SwissprotQ8W2F31e-144PIF4_ARATH; Transcription factor PIF4
TrEMBLA0A078D5A80.0A0A078D5A8_BRANA; BnaA03g19970D protein
STRINGBra000283.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-132phytochrome interacting factor 4