PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02228.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 356aa    MW: 39606.9 Da    PI: 7.0186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02228.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.76.4e-16167212555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hne ErrRRdriN+++ +L++llP+a      K +K++iL  ++e++k+Lq
  Rsa1.0_02228.1_g00001.1 167 HNESERRRRDRINQRMRTLQKLLPTA-----SKADKVSILDDVIEHLKQLQ 212
                              *************************9.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-18165234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-13167212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-9167216No hitNo description
SMARTSM003531.9E-16168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0016607Cellular Componentnuclear speck
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
SNYGVKELTW ENGQLTVHGL GEGGVEPTAS ANLLWTQALN GCETLESVVH QAALQPSKMQ  60
QLQDHNNSES KDGSCSRKRG YPQEMDYWFS PQEDSHRVGH SVTASASGTN MSWASFESGR  120
SLKTARTGDR DYLFSGSETQ ETEGDEQETR GEGGRSNGRR GRAAAIHNES ERRRRDRINQ  180
RMRTLQKLLP TASKADKVSI LDDVIEHLKQ LQAQVQFMSL RANLPQQMMM PQLPPPQSVL  240
SIQHQQQQQQ QVQQQQQQQQ FQMSLLATMA RMGMGGGGNS TYGGLVPPPP LMIPPMDNRD  300
CTNASSSDPY SAFLAQTMNM DLYNKMAAAI YRQQSDQTTK VNTGMPSSST NHEKRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00571DAPTransfer from AT5G61270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527340.0AK352734.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136449.10.0PREDICTED: transcription factor PIF7
SwissprotQ570R70.0PIF7_ARATH; Transcription factor PIF7
TrEMBLA0A078EN820.0A0A078EN82_BRANA; BnaA03g40080D protein
STRINGBra012972.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141231822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.11e-145phytochrome-interacting factor7