PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02220.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 566aa    MW: 62280.2 Da    PI: 4.8036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02220.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13395440454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Rsa1.0_02220.1_g00001.1 395 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 440
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-5464252IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-18394458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-15394445No hitNo description
Gene3DG3DSA:4.10.280.101.4E-18395459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDDHRSRVSL SPPDPHMSNY FLNQTTPPAD NDNAVEAFIG TNHWSQQTQP PPPQTLSQFN  60
EDTLQQRLQT LIESAGERWT YAIFWQISHE FDSPTGENTV ILGWGDGYYR GEEDKEKKKK  120
QSLSSNPAEQ EHRKRVIREL NSLIAGGGGA GVSDEANDEE VTDTEWFFLV SMTQSFVNGV  180
GLPGESFLNS RVIWLSGSGA LTGSGCERAR QGEVYGLQTI VCIAAENGVV ELGSSEVISQ  240
SSDLMDKVNG LFNGNGNGEA SSWGFNLNPD QGENDPALWL SEPNVTGIEP VVQETPPPGA  300
IENAGGDLNF SSSGLNQSGN FKQGSSSSKK RSPVVSKDEE MLSFTTVVRS AAKSVDSDHS  360
DIEASVVKEA IIVEPEKKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN  420
VSKMDKASLL GDAISYINEL KTKLQQAEAD KEEVQKQLDG MGKEGGGSRR AKERKSNRDS  480
ESSVEMEIDV KIIGWDVMIR VQCGKKNHPG ARFMEALKEL DLEVNHASLS VVNDLMIQQA  540
TVKMGSQFFN HDQLKAALML KVGEDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ywc_B1e-1103424817227Transcription factor MYC3
4ywc_A1e-1103424817227Transcription factor MYC3
4rru_A1e-1103424817227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376384KKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00085PBMTransfer from AT5G46760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612311.10.0PREDICTED: transcription factor MYC3-like
RefseqXP_013743293.10.0PREDICTED: transcription factor MYC3-like
SwissprotQ9FIP90.0MYC3_ARATH; Transcription factor MYC3
TrEMBLA0A0D3E6Y30.0A0A0D3E6Y3_BRAOL; Uncharacterized protein
STRINGBra024998.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.10.0bHLH family protein