PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02096.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 337aa    MW: 36982 Da    PI: 10.1958
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02096.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31275332359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++++++++tYegeHnh+
  Rsa1.0_02096.1_g00001.1 275 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCVDETSMLIVTYEGEHNHS 332
                              9*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.4E-15235271IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33261332IPR003657WRKY domain
PROSITE profilePS5081129.126268334IPR003657WRKY domain
SuperFamilySSF1182901.7E-26271332IPR003657WRKY domain
SMARTSM007743.5E-37273333IPR003657WRKY domain
PfamPF031061.7E-26275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEEAEAATKA AVDSCHGVLN LLSQQTSDPK SITVGTREAV SKFRRVASLL SSGLGQRNIK  60
KLNNNKLRSH MLPQHIFLES PVCSNNPISG SLPVLAPTPL QIVPPSAASY GEFEPKQRPG  120
HPPGMLLNQK MCVDKSFLEL KPPSSRAIDQ NPYQFIPNHQ QGVYSRSNSD LNLKFNGPGG  180
GSCYSPSVSN GSRSFVSSLS MDASVADYNR NSFHLFGLPQ GSDHVSQHSR RTGCSGSLKC  240
GGRSKCHCSK KRKLRVRRSI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS  300
SLRGCPARKH VERCVDETSM LIVTYEGEHN HSRLLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20261331271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02096.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931680.0KM593168.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY146) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434810.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU60.0WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A078H8R50.0A0A078H8R5_BRANA; BnaA02g31030D protein
TrEMBLM4DVS30.0M4DVS3_BRARP; Uncharacterized protein
STRINGBra020617.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.10.0WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]