PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02007.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 634aa    MW: 70428.5 Da    PI: 6.2507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02007.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000534574941355
                              HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  Rsa1.0_02007.1_g00004.1 457 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 494
                              67799************55......5566667777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.450.404.8E-45144IPR029016GAF domain-like
PfamPF142157.0E-277166IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.55E-4438495No hitNo description
PROSITE profilePS5088811.28444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-5457500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-4457512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MGSTSHEILR SLCSNTEWKY GVFWKLNHRS RIKNIWKNLM LNAALFKVLT LEDAYYDNHG  60
HNNSPKNMRN DPLGLALAKM AYHVYSLGEG IVGHVAVSGE HQWVFPEYYD NRYSASEFHN  120
VWESQISAGI KTILVVPVGP CGVVQLGSFL KVDEDVTLVN HIKHMFLLKD PLADHAANIM  180
QCNMLQPKLP SEYLHAEAFP NCSGEVGKAM DVEESSFLTQ YPNLYPYLKN HALNNTSSVE  240
TERLITDQSY PGLDSTFHTL STDKEEAERV PERRCESSRF DALISSGYNF PGSELLEALG  300
SGFKQQSRGL EELVKSEHSS ATIRPTDDNM SHSQLTFDSA PENLLDAVVA SVVCHSDGNA  360
RDDIFSSRSV QSFLTSMEPS GHNNHIVDRA MNQLPLAEVD TQQNPSDICG AFSSIGFSST  420
CPSSSSDHFQ TSLEMMPKKN KKRAKPGESS RPRPRDRQLI QDRIKELREL VPNGSKCSID  480
SLLERTIKHM LFLQNVTKHA DKLSKSANSK MQQKETGAQG STCAVEVGGH LQVCSIIVEN  540
LNKHGMVLIE MLCEECSHFL EISNVIKSLD LTILRGITEA QGDKTWICFV VEPKQQSDAE  600
DGHFVVFGAN ISAKGQWEAV AASSAGYLVA RLCV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02007.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529850.0AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439028.10.0PREDICTED: transcription factor bHLH155-like
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLA0A0D3BT970.0A0A0D3BT97_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BMG80.0A0A3P6BMG8_BRAOL; Uncharacterized protein
STRINGBo4g052580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ohashi-Ito K,Matsukawa M,Fukuda H
    An atypical bHLH transcription factor regulates early xylem development downstream of auxin.
    Plant Cell Physiol., 2013. 54(3): p. 398-405
    [PMID:23359424]