PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02006.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 180aa    MW: 20582.3 Da    PI: 6.4187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02006.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-09108149854
                              HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              + rrRR+ri +++  L++++P  a      K++ a++L +A++Y k L
  Rsa1.0_02006.1_g00005.1 108 VARRRRERISEKIRILKRMVPGgA------KMDTASMLDEAIRYTKFL 149
                              569******************966......**************8877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.335100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-13105159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-12106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-10106154No hitNo description
SuperFamilySSF474591.57E-13106160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6109149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMQPHHLLMN WNKPNDLTTQ ENSFHHNPHL MVDLPSETLS HFQPPPTLFS DHGGGEEAEE  60
EGGEEEMDAM KEVQYAIAAM QPVDIDPATV PKPNRRNVRV SDDPQTVVAR RRRERISEKI  120
RILKRMVPGG AKMDTASMLD EAIRYTKFLK RQVRLLQPHT QLGAPMSDPT CLCYYHNSDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3863560.0GU386356.1 Brassica oleracea bHLH transcription factor (BolC.IND.a) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134568.11e-106PREDICTED: LOW QUALITY PROTEIN: transcription factor IND
SwissprotO813132e-83IND_ARATH; Transcription factor IND
TrEMBLA0A0D3B9671e-108A0A0D3B967_BRAOL; Uncharacterized protein
STRINGBra000979.1-P8e-86(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-69bHLH family protein