PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01944.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28371.3 Da    PI: 8.0633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01944.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-1572124155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn++Er+RR++iN  fe L ++lP  +    skKls  ++  + v+YI +Lq
  Rsa1.0_01944.1_g00003.1  72 KKLNHNANERNRRKKINYLFESLSSCLPGsD---ESKKLSIPQTISRSVQYIPELQ 124
                              6789*************************66...*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.50771123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-1372128No hitNo description
SuperFamilySSF474591.7E-1572143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1272124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1472144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1177129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MHALVTSLFP NFQLASMGEY ESYNIVGDNH SNGTFLDFPV PKTYEVVHHQ TSLGVSVPSE  60
GNGTDNDLVM IKKLNHNANE RNRRKKINYL FESLSSCLPG SDESKKLSIP QTISRSVQYI  120
PELQGQVKML NQKKEDLLAR VSGQRERYVK SQPKVVASYV STVFATMLRD NEVMVQISSS  180
KIMNLSICNV LNGLEDDGFV LVDISSSSSR GERVFYTLHL QVDKIDNYKL ISEELSQRVL  240
YLYEKCGKSF K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710748.11e-148PREDICTED: transcription factor ORG2-like
SwissprotQ9M1K11e-121ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A0D3DTT11e-148A0A0D3DTT1_BRAOL; Uncharacterized protein
STRINGBra007290.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-122bHLH family protein