PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01883.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 503aa    MW: 53639 Da    PI: 5.0233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01883.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11319361754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Rsa1.0_01883.1_g00003.1 319 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 361
                              79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-16315382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9318361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-13319365No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15319374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.02E-7432492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVLDGNGGGV WLGGGGGGGG ERVQEEENEE ASWGRNQEDG GGGGSLSHQF KPMLESGGGD  60
WFSSNQPHPQ DLQMLQSQQD FRFLGGFGFN PNDNLLLLQH SMDSSSSCSP SQAFTLDPSQ  120
SSFLANKSCL LNVPSSTNPF DNAFEFGSDS GFLGQIQAPV SMGFGSLTQL GSSVPDFLSA  180
RSLLPPENNN TTPLCGGGGG GFTPLELEGF GSPASFVGNR AKVLKPLEVL ASSGAQPTLF  240
QKRAAMRQSS GSKMGNSESS GMRRLSDDGE MDETGIEVSG LNYESDELNE SGKASESVQN  300
GGGGGGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIDYLKE  360
LLQRINDLHN ELESTPTGSL PPTSSSFHPL TPTPQTLSCR VKEELCPSSL PSPKGQQARV  420
EVRLREGRAV NIHMFCGRRP GLLLATMKAL DNLGLDVQQA VISCFNGFAL DVFRAEQCQE  480
GQEILPDQIK AVLFDTAGYA GMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308326KKKGMPAKNLMAERRRRKK
2320327ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3741580.0EU374158.1 Brassica rapa subsp. chinensis ICE1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644714.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_013662974.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE20.0ICE1_ARATH; Transcription factor ICE1
TrEMBLF6GPI50.0F6GPI5_BRARC; ICE1
STRINGBra025226.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.40.0bHLH family protein