PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01881.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 389aa    MW: 42692.8 Da    PI: 5.2387
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01881.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.34.8e-38162250297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              +fqrlw+eeDei++LqG+idfk++tgksp++d++  y+++kksisf+vsk+q+++Kir+L+kK+ +k+k        sf+k+hdqk
  Rsa1.0_01881.1_g00002.1 162 AFQRLWTEEDEIAVLQGMIDFKKETGKSPYEDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQK 240
                              69***************************************************************99876.......********* PP

                   DUF573  88 ifelskkiWg 97 
                              ++ l++ iWg
  Rsa1.0_01881.1_g00002.1 241 SYRLCQYIWG 250
                              *********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.8E-30163250IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSKKRNPLED PPAASSSDDE EVESSAEEEE EEEDDDSSSE EDAPAKPPSS SAAAVTIAVP  60
GKPTASLPAA TQASDSESGS ETETDSESEP EQPTKNKGSG KAILTAKPAP PPPPVALALP  120
AKKSGAKRPS EVSSSKETTN SKRVKKDVED KKMGEDSKKP GAFQRLWTEE DEIAVLQGMI  180
DFKKETGKSP YEDTNVYYDY IKKSISFEVS KNQFMDKIRS LRKKYIGKEK PSFTKPHDQK  240
SYRLCQYIWG PDGMGLESAV KSNGASKKSQ KKTKKLDSVK QELSFGASPN GKAVVGDDEE  300
KDVESSLAAK KHDWFENSFL VKGIAGFGVD EHCVKQRWSL VPVETKKKVE EKLKLLQAKE  360
IEYVLQKTEV LHEVTSMIAE ASKNKLLDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716592.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLM4EE670.0M4EE67_BRARP; Uncharacterized protein
STRINGBra027078.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-83DNA-binding storekeeper protein-related transcriptional regulator