PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01878.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 175aa    MW: 20499.1 Da    PI: 10.5015
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01878.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.5e-061644230
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                             r++ n rE+ RR r+++ f  L +++ + 
  Rsa1.0_01878.1_g00006.1 16 REKRNLREKERRTRMKDLFCLLSSHVSPT 44
                             8899*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-101480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.9441463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERKREIGEG SSLSLREKRN LREKERRTRM KDLFCLLSSH VSPTRRLPVP QLIDEATSYM  60
IKMKENVKYL KEKKKTLLGR EVWKRSEGSS SLLPKLSIHS RDSIIEMNLI IDVNMKRLML  120
HELMRVFEEE GAQIMTASLQ NLNDRTAYTI IAQAVICRIG IDPSRIENRV RDIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01878.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547604.11e-116transcription factor bHLH168-like isoform X1
SwissprotQ9XIJ13e-92BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A397YA721e-115A0A397YA72_BRACM; Uncharacterized protein
STRINGAT1G10586.11e-90(Arabidopsis thaliana)
STRINGfgenesh2_kg.1__1131__AT1G10586.11e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.11e-72bHLH family protein