PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01836.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 754aa    MW: 83251.9 Da    PI: 6.641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01836.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.6e-191565155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Rsa1.0_01836.1_g00008.1 15 TKFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 65
                             5899******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-291572No hitNo description
PfamPF008471.8E-111665IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-281673IPR001471AP2/ERF domain
PROSITE profilePS5103220.7191673IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-201674IPR016177DNA-binding domain
SMARTSM003802.3E-341679IPR001471AP2/ERF domain
PRINTSPR003672.0E-71728IPR001471AP2/ERF domain
PRINTSPR003672.0E-73955IPR001471AP2/ERF domain
PfamPF143682.8E-12210293IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SuperFamilySSF476992.55E-11219295IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.104.9E-11220293No hitNo description
CDDcd000108.78E-16223285No hitNo description
PROSITE profilePS5132245.556377521IPR008883Ubiquitin E2 variant, N-terminal
Gene3DG3DSA:3.10.110.109.0E-43381520IPR016135Ubiquitin-conjugating enzyme/RWD-like
SuperFamilySSF544952.53E-30382517IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF057433.7E-37397517IPR008883Ubiquitin E2 variant, N-terminal
PfamPF094546.5E-22675735IPR017916Steadiness box (SB) domain
PROSITE profilePS5131212.427678746IPR017916Steadiness box (SB) domain
SuperFamilySSF1401113.53E-18680738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006464Biological Processcellular protein modification process
GO:0015031Biological Processprotein transport
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MNTSKSKKKQ EEAGTKFLGV RRRPWGRYAA EIRDPTTKER HWLGTFDTAE EAALAYDRAA  60
RSMRGTRART NFVYSDMPPS SSVTSIISPD DPPPPPPPPA AATPCSNDHV DYMMMFNQYS  120
STDSPMLQPN QVESSYMFGG SPSCYSNSSS ELPPLPSDLS NSCYSQQPWS VEDYSSATYF  180
EGEYVHSPMF STMPSVSDSL PQVVANFGIM HTSGQSVSCL NQLAPCLNYL NGTKDVPEVC  240
CNPLKLVIRN NPECLCRMIS NRGSSKAEQA GINVNDAQML PARCGEHVNP IACLTRSRGS  300
TNSDRSSSTG NSSSQSYWMT TIAFACSLIN VPLDDNPRLA RGPSSALIKS RFILSMAPPP  360
GTDPAKLQQI QQFLTSVLSQ RGPTALPYAE TTKWLIRQHL LTLISSYSSL EPKTATFTHN  420
DGRSAILLQA DGTVPMPFQG VSYNIPVVLW LLESYPRDPP RVYVNPTRDM IIKRPHSNVS  480
PSGLVSLPYL HAWVYPSSNL LDLAAQLSSA FSRDPPLYSQ RRPPPQSSPS IGSGYSPSPS  540
IGSGYSRPSP SPPIGSGYAR PPPPSYHQQQ QQTDDAAEVY KRNAINKLVE MVHVDLVTMR  600
SVREAEAEGL LSLQATLERR EGELARGLRE MVSEKETLEQ ELQVVSMNTD VLDSWVRENQ  660
GRSKTDLDDV DSAFVCLETM SKQMLECTAS DLAIEDAVYA MDKSFRDGVL PFDQYLRSVR  720
LLSREQFFHR AKAEKVRGMQ MEAQVASIAA RLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2f0r_A6e-2639552034158Tumor susceptibility gene 101 protein
2f0r_B6e-2639552034158Tumor susceptibility gene 101 protein
4eje_A6e-2639552034158Tumor susceptibility gene 101 protein
4eje_B6e-2639552034158Tumor susceptibility gene 101 protein
4yc1_A6e-2639552034158Tumor susceptibility gene 101 protein
4yc1_B6e-2639552034158Tumor susceptibility gene 101 protein
4yc1_C6e-2639552034158Tumor susceptibility gene 101 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies (MVBs). {ECO:0000250|UniProtKB:Q9LHG8}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01836.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892120.0AC189212.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446247.10.0PREDICTED: protein ELC-like
SwissprotQ9FFY60.0ELCL_ARATH; Protein ELC-like
TrEMBLA0A3P6ALZ00.0A0A3P6ALZ0_BRACM; Uncharacterized protein
STRINGBra023439.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-56ERF family protein
Publications ? help Back to Top
  1. Bachmair A,Novatchkova M,Potuschak T,Eisenhaber F
    Ubiquitylation in plants: a post-genomic look at a post-translational modification.
    Trends Plant Sci., 2001. 6(10): p. 463-70
    [PMID:11590065]
  2. Winter V,Hauser MT
    Exploring the ESCRTing machinery in eukaryotes.
    Trends Plant Sci., 2006. 11(3): p. 115-23
    [PMID:16488176]
  3. Spitzer C, et al.
    The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis.
    Development, 2006. 133(23): p. 4679-89
    [PMID:17090720]
  4. Shahriari M, et al.
    The Arabidopsis ESCRT protein-protein interaction network.
    Plant Mol. Biol., 2011. 76(1-2): p. 85-96
    [PMID:21442383]
  5. Richardson LG, et al.
    Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery.
    Front Plant Sci, 2011. 2: p. 20
    [PMID:22639582]
  6. Gao C, et al.
    A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.
    Curr. Biol., 2014. 24(21): p. 2556-63
    [PMID:25438943]