PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01821.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 581aa    MW: 63317.4 Da    PI: 8.392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01821.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.31e-16401447455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  Rsa1.0_01821.1_g00005.1 401 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 447
                              6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.93E-18393451No hitNo description
SuperFamilySSF474598.11E-21394460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-20394455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-14401447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18403452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLNRCGRVSK LGGGHLSRGS ITTRLRSPVQ GSHFLFRFLQ LLQPFFSALH KVKRLKSLPT  60
LFLSASSNTM PLFELFRLSK AAQDNNTSPT VDEVVELVWE NGQISTQSRS MNIPPQHSVH  120
HQGTSSTPRE TGNTSKTTLV DEIPMSVPSL MTGLSQDDDF VPWLNHHHHH HHHHQSLDGY  180
CSEFLRDVSP VTVNEQEEDT ERRNNGNGSA SSSRGYNGSQ SHSLYGTGRA RDPVSQPETT  240
QEPLVTTSNK PGLVNFSHFL RPATLGKSTN NNNPQGSKEK SPQTTPPNVF QTRVVGGAKD  300
SEDKVVNESV ASDMPKDNQK ASEDSGRKEQ ESEKAVVCSS VGSGNSLDGP TSESPSLSVK  360
RKHSDVNCHS EDVEGESGDG RKEAAPSRTG TGSKRSRSAE VHNLSERRRR DRINEKMRAL  420
QELIPNCNKV DKASMLDEAI EYLKSLQLQV QIMSMASGYY MPPVMFPPGM GHYPAAAMAM  480
GMGMPYAMGL PDMSRGGPLV NNGPQFHVPG MQQPVGMGIP RVSGGGFFTG SSSTMEMNKS  540
EDGSTRDLSG AAKDQTTTKD NNSLRPIKRK QASSDQFCGS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1405410ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599535.10.0PREDICTED: transcription factor PIF3-like
SwissprotO805360.0PIF3_ARATH; Transcription factor PIF3
TrEMBLA0A078GBA10.0A0A078GBA1_BRANA; BnaC08g42700D protein
TrEMBLA0A0D3DYB30.0A0A0D3DYB3_BRAOL; Uncharacterized protein
STRINGBra031668.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.20.0phytochrome interacting factor 3