PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01819.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 299aa    MW: 33563.9 Da    PI: 8.461
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01819.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.43.1e-3161176366
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                              g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  ++el+ +                       
  Rsa1.0_01819.1_g00004.1  61 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQVYDLQDRLGLSQPSKVIDWLLEAAKDDVDELPPLqfpqgfnqmypslifgessstsa 146
                              78*************************************************************66666666555555555544444 PP

                      TCP  66 .............................s 66 
                                                           +
  Rsa1.0_01819.1_g00004.1 147 asafpgtnlgfleswniggsssrtrsriaD 176
                              444444444333333333333333322221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.42462120IPR017887Transcription factor TCP subgroup
PfamPF036344.9E-3062199IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTSREFDEEE TQAKKERDHN HQLNLNNMLQ QQNQPSSAPT SRQWTSAFRN PRIVRVSRTF  60
GGKDRHSKVC TVRGLRDRRI RLSVPTAIQV YDLQDRLGLS QPSKVIDWLL EAAKDDVDEL  120
PPLQFPQGFN QMYPSLIFGE SSSTSAASAF PGTNLGFLES WNIGGSSSRT RSRIADTTPR  180
ESFDLDKGKW VKQDENSNQD HGFNTSQQHF SLTNLYNNNN NASSYYNLGH VQHSLDQPGN  240
NVTVAISNVP YNNNLNLPPP PTMSSLFPTY PSFLGASHHV VDGAGNLQLF SSNANRNNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1867121155Putative transcription factor PCF6
5zkt_B3e-1867121155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01819.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437652.10.0PREDICTED: transcription factor TCP5-like
SwissprotQ9FME31e-143TCP5_ARATH; Transcription factor TCP5
TrEMBLM4EKM70.0M4EKM7_BRARP; Uncharacterized protein
STRINGBra029344.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-119TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]