PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01811.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 500aa    MW: 56390.3 Da    PI: 7.3038
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01811.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA82.76e-26334393258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               ++YVN+KQy++I++RRq+Rak+++   ++kl+++srkpy h+SRh hAlrRpR sgGrF
  Rsa1.0_01811.1_g00005.1 334 GTIYVNSKQYHGIIRRRQSRAKAAAvldHNKLTSRSRKPYKHHSRHLHALRRPRRSGGRF 393
                              689*********************99999******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540018.93E-1313132No hitNo description
PROSITE profilePS508029.10214134IPR003323OTU domain
PfamPF023382.0E-52195IPR003323OTU domain
SMARTSM005212.3E-26331396IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.542332396IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.8E-19335357IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-22335393IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.8E-19370393IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MTKKHEIRSY NDGFEIIPIP KDGNCMFSVL SHQITSNLDH QREYRRMIGS PEHVHVPVAV  60
GDPYQHYCDY MRIDGHWGRH TELFAASHIF GCRVVHRRDT ATNILDPPNA DDETPEIHLL  120
YDLFGGHYES LQTSSQPKEE KMVYENKFNN SLNLRGVGLS DQCQEESVLK IGRTEEASQT  180
EESAEVQEIA ESSQIAEKKK QKRSPEAENS PLVRSHIPWW NGFGSQPLAP VSLAGDADSF  240
HIGPAGETEH GVDKQSNSAS PLAFSLGVKS SIDVLKPRAA AFSLQPPCLE LGFCQPQIYT  300
KYPCAQQEHY GVAVSAYGSQ SRVMLPLNME TEDGTIYVNS KQYHGIIRRR QSRAKAAAVL  360
DHNKLTSRSR KPYKHHSRHL HALRRPRRSG GRFLNTKGKK ADETKQTHPQ PQQSNSQSSE  420
VLHPEREIMN LSNGLNVSGE EVTSINHFLS SSVHPLGDGM VMPSKWSEAA AVEWLLQFQY  480
LIFLYLCFPV KRREMENSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_A4e-13336396562HAPB protein
4g91_A4e-13336396562HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891939e-63AC189193.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003A10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696108.11e-142PREDICTED: LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2
SwissprotQ9M9X41e-125NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078G0251e-128A0A078G025_BRANA; BnaAnng02740D protein
STRINGfgenesh2_kg.3__563__AT3G05690.11e-124(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-118nuclear factor Y, subunit A2