PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01737.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 191aa    MW: 21432.8 Da    PI: 7.9964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01737.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-051371655
                             HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +N+ +  Lr+l P     + k+ + a+i   A+e+Ik++q
  Rsa1.0_01737.1_g00003.1  1 MNEHLKSLRSLTPCF---YIKRGDQASIIGGAIEFIKEMQ 37
                             8*************9...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-5148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.563136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-8153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-6141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNEHLKSLRS LTPCFYIKRG DQASIIGGAI EFIKEMQQLV QVLESKKRRK TLNRPSFPCD  60
HQTLEPSLLA AATNATTRMP FSQIENVMTT STFKEVGACS NSHHANVEAK ISGSNVVLRV  120
VSWRIEGQLV RIISVLEKLS FQVLHLNISS MEESVLYFFV VKIGLECHLS LEELTLEVQK  180
SFVPEAIVST N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14549KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129643.11e-127PREDICTED: transcription factor MUTE
SwissprotQ9M8K61e-119MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A078GHS91e-127A0A078GHS9_BRANA; BnaA05g31160D protein
TrEMBLM4DW811e-127M4DW81_BRARP; Uncharacterized protein
STRINGBra020775.1-P1e-127(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70732640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-120bHLH family protein