PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01638.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 290aa    MW: 31862.2 Da    PI: 7.9143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01638.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09201242955
                              HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               ++RR+ri +++ +L+el+P+ +      K++ +++LekA+ Y+k Lq
  Rsa1.0_01638.1_g00003.1 201 AKNRRERISERLKTLQELVPNgN------KVDLVTMLEKAIGYVKFLQ 242
                              69*******************55......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.862192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.20E-11194246No hitNo description
Gene3DG3DSA:4.10.280.103.3E-12194249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-13196252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-11198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6201242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MALLNDHPNE PNYISKQNSS SSEDLSSPEN YGLASSSSTM NSDHQQNHQG VVFYPSGESV  60
EDHNSLLDFN GSSFLNFNNN NHHESFHHPT ISCGGGLSFL EGNNMSYGFT NWSQHHMDII  120
SPRPTETPGI NQGHKDWLYS DSTVVTTGSR HESLSPKSAG NKRPYTGKSI QPPSKKPSSG  180
ANGKAKPKPI TPPKDPQSLA AKNRRERISE RLKTLQELVP NGNKVDLVTM LEKAIGYVKF  240
LQLQVKVLAT DEFWPAQGGK APDISQVKDA IDAILSSSQR DRNSNPINNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01638.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463469.10.0PREDICTED: transcription factor bHLH83-like
SwissprotQ9C7071e-143BH083_ARATH; Transcription factor bHLH83
TrEMBLA0A078FFF70.0A0A078FFF7_BRANA; BnaC06g13020D protein
STRINGBo6g101000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-118ROOT HAIR DEFECTIVE6
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Lin CY, et al.
    Pathways involved in vanadate-induced root hair formation in Arabidopsis.
    Physiol Plant, 2015. 153(1): p. 137-48
    [PMID:24833217]
  4. Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J
    Root hairs.
    Arabidopsis Book, 2014. 12: p. e0172
    [PMID:24982600]
  5. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  6. Moro CF, et al.
    S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana.
    New Phytol., 2017. 213(4): p. 1771-1786
    [PMID:27880005]
  7. Bahmani R,Kim DG,Kim JA,Hwang S
    The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 1763
    [PMID:27933081]
  8. Liao X,Lovett B,Fang W,St Leger RJ
    Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects.
    Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991
    [PMID:28708056]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]