PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01575.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 167aa    MW: 18373.9 Da    PI: 10.4349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01575.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-1982136155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l g
  Rsa1.0_01575.1_g00007.1  82 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLIG 136
                              59********.**********54433367**********************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.8E-341166IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.06E-2382143No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2783144IPR001471AP2/ERF domain
PROSITE profilePS5103221.54983144IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1983145IPR016177DNA-binding domain
PfamPF008472.3E-1383136IPR001471AP2/ERF domain
SMARTSM003807.4E-3183150IPR001471AP2/ERF domain
PRINTSPR003672.3E-118495IPR001471AP2/ERF domain
PRINTSPR003672.3E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRIVRISVT DAEATDSSSD EETEKPRGAA TTTTTTRGKR LVKEIVIDED SNKLDACCSS  60
SKTRFKIRIP AEFLKTTAEG KKKFRGVRQR PWGKWAAEIR CGRALKGRRD RLWLGTFDTA  120
EEAALAYDNA AVQLIGPHAP TNFSFPAESS RQEVKMVAGA SAVARVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16831431471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01575.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452899.11e-109PREDICTED: ethylene-responsive transcription factor ERF070-like isoform X1
SwissprotQ9C9954e-76ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3APU18e-91A0A0D3APU1_BRAOL; Uncharacterized protein
STRINGBo2g070850.11e-91(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.12e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]