PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01400.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 474aa    MW: 52530.4 Da    PI: 8.7367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01400.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.3e-18229278255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Rsa1.0_01400.1_g00008.1 229 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 278
                              889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-23226298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-19228297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-15229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-15229280No hitNo description
SMARTSM003534.4E-13233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MELPQSRPFK AQGSHLKTHD FLQPLECVGG SKEETSRADT TRIASEKPPP LQHVLPGGIG  60
TYTISSIPYF SNHQRVPKPE LSPPMMFTAS GGVERNAVDV AAVASGFTLW DESGSGNKGQ  120
TRKENSAAGE RAGVATTIGQ WPVVEQRSQS LTNNNNPLSG FCSRSSSQGS GLKSQSFMDM  180
IRSAKGTSPD DDLDDDEDFI MKKESSSTSQ NHRDLRVKAS NDPKLNTPRS KHSATEQRRR  240
SKINDRFQML RQLIPNSDQK RDKASFLLEV IEYIQFLQEK TSKYETPYQG WNQEPAKLLN  300
WQRNNQQLVP EGTVSFAPKL EQEKNNIPVL ATAETLNRER FPLSVQSSSL FSPVIAGNPV  360
TELQARVASS EPAEPNPSSR SHTQPLKEEG DDEEGREGNN ISISSVYSQG LVKRLREALE  420
KSGVDLTKTS ISVEIELAKQ LSSFKNHEVC DPVSRTGNDK QTRKPKRLKT YSTS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01400.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533131e-165AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476799.10.0PREDICTED: transcription factor BIM1-like isoform X2
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLM4CP310.0M4CP31_BRARP; Uncharacterized protein
STRINGBra005969.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.50.0bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]