PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01329.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 316aa    MW: 34804.6 Da    PI: 5.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01329.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10204252355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_01329.1_g00002.1 204 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 252
                              58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-17199269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-11199256No hitNo description
PROSITE profilePS5088815.485201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-17202269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-7204252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGGESNEGEM GLNHGHDPSR VGSTTSMPLY AKADPFFSSA DWDPVVNVGG FSSSHYSSVV  60
MDNPGMSCFT HYQPGSGYPD MPTSLLPFVD CGDGGGGHFL GSDKNGDSVG RLIRAGESHD  120
QVSDDGVLGV SPNRKRRQAE AESQRNKKAV EEYREDPQRG SDQSQTKHKD GQSKETMNKE  180
SSQSEEAPKE NYIHMRARRG QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM  240
LDEIINYVQS LQQQVEFLSM KLATVNPEIN IDIDRIIAKD TALESELQSL YQMGFVSNPS  300
TMSSFSPNNG RLKPEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01329.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486323.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_018492018.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN91e-176BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A0D3DY790.0A0A0D3DY79_BRAOL; Uncharacterized protein
STRINGBo8g110780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-176bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]