PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01328.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 331aa    MW: 36188.3 Da    PI: 6.1121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01328.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10207255355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_01328.1_g00006.1 207 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 255
                              58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-10202259No hitNo description
SuperFamilySSF474594.45E-17202271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17205272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7207255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGGESNEGEM GLNHGGDDQN GISRVGMPLY AKVDPFFSSA DWDPVVSVGV GGGGFSSSHY  60
PSMAAMDNPG MSCFPHYQTG SGSGYHDMPA SLGPFGDCGG GGGGQFLGSD KKEESVGRLI  120
RAGDGHQVSD DVVLGDGSSN RKRRQPVAES QWNKKAVEEF QEEPQSQKKH KNDQSKEKMM  180
NKESSQSEEA PKENYIHMRA RRGQATNSHS LAERVRREKI SERMRLLQEL VPGCNKITGK  240
AVMLDEIINY VQSLQQQVEF LSMKLATVNP ELNVDIDRIL AKDLLQPRDR NTPTLGLNPF  300
TGFQGTMQNI STTTNPQYNS LPQASPLKPE L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01328.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441078.10.0PREDICTED: transcription factor bHLH74-like isoform X2
SwissprotQ6NKN90.0BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A397Z1U50.0A0A397Z1U5_BRACM; Uncharacterized protein
STRINGBra019962.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]