PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01294.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 157aa    MW: 17493.5 Da    PI: 4.3021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01294.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000337451155
                             HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH 11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             +R + ++++f+ Lr++  + a        s  +iLe A +YIk+L+
  Rsa1.0_01294.1_g00006.1  7 NRDSSLREKFQLLRSITNShA-------DSETSILEDASKYIKNLE 45
                             677788999999999988844.......89999**********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.3E-5560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-4755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MVSKEYNRDS SLREKFQLLR SITNSHADSE TSILEDASKY IKNLEHKVEN INNETTSEQY  60
FCDPTDPMVT VDTLEKGFMI KIMSGKNEPG MLVCVLEAFE DLGLEVVEAR VSCTDSFSLH  120
AIGISNNDDG ESMDAEAVKQ AVAVAVRTWS DNHDPRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461219.11e-110PREDICTED: transcription factor bHLH93-like
TrEMBLA0A0D3CU272e-95A0A0D3CU27_BRAOL; Uncharacterized protein
STRINGBra003232.1-P7e-95(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-06beta HLH protein 93