PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01234.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 243aa    MW: 26828.7 Da    PI: 4.5381
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01234.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.7e-1860110155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr ++ +g+Wv+eIr p++   + r++lg+f ta++Aa+a++ a+++++g
  Rsa1.0_01234.1_g00006.1  60 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTFATADMAARAHDVAALAIKG 110
                              68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1260110IPR001471AP2/ERF domain
SMARTSM003801.6E-3661124IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2161119IPR016177DNA-binding domain
PROSITE profilePS5103222.64261118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3161119IPR001471AP2/ERF domain
PRINTSPR003672.8E-106273IPR001471AP2/ERF domain
CDDcd000181.98E-3362120No hitNo description
PRINTSPR003672.8E-1084100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTSSNSSSSR TSSSSDQSDV TTTTSTHLSE ISPIKNTRKR CRDSSSSSSS SSSELNPKYP  60
VYRGVRMRSW GKWVSEIRQP RKKSRIWLGT FATADMAARA HDVAALAIKG SSAVINFPEL  120
ASVLPRPASS SPHDIQAAAA EAAAMVFDDK ASKTETEEAE APPSPESSKE EERLEEIVEL  180
PNIEVVGSYD MSVKSSHSDL DYSEPLDCWV YPPPPVMDLY EEDFLEFDFL ELWSFPHTEL  240
INP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1750118372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01234.1_g00006.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491018.11e-123PREDICTED: ethylene-responsive transcription factor ERF036
SwissprotQ9LU182e-83ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A078GXB61e-109A0A078GXB6_BRANA; BnaC05g37110D protein
STRINGBo5g126280.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.14e-50ERF family protein