PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01228.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 345aa    MW: 39151.7 Da    PI: 7.0208
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01228.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.97.3e-38822262128
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                              a+kkdrhskihT++g+RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl+++ + i el++ +   +++    ++  + ++   
  Rsa1.0_01228.1_g00007.1  82 AVKKDRHSKIHTAQGLRDRRVRLSIGISRQFFDLQDMLGFDKASKTLDWLLKKSRRDIEELVQEKKLYNNDEdfGNNGGNLEK--- 164
                              89**************************************************************4444422222111111111... PP

                      TCP  86 ssg......................kaaksaakskksqksaasalnlakesrakarararertre 128
                                +                       + k+  +++++++  ++ ++  k sr kar +a+e+ re
  Rsa1.0_01228.1_g00007.1 165 --DddvgdtsfvygscsdcfeeevvCKVKKP-EKRNKKTGLSNISSSTKRSRTKARGKAKEKARE 226
                              ..12333455666777777776543222222.333333334446666668888888888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3683226IPR005333Transcription factor, TCP
PROSITE profilePS5136933.75384142IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSSSNNNYNN GSNSAVFPLS LYLSSLSGHQ GIPYNHQSSA SPGQMVSAVP ESLINYMPFS  60
SNSAMNQQGL DIPEVSREIK KAVKKDRHSK IHTAQGLRDR RVRLSIGISR QFFDLQDMLG  120
FDKASKTLDW LLKKSRRDIE ELVQEKKLYN NDEDFGNNGG NLEKDDDVGD TSFVYGSCSD  180
CFEEEVVCKV KKPEKRNKKT GLSNISSSTK RSRTKARGKA KEKAREIISD HPETASKIIQ  240
TEIMDPFKRS INFNGGEDMT DFFYKESIQE SANQECITKI QVNLPMNMDQ SYNQQYPEFM  300
LKDQGSSSNY YAILPQNLDF DYNPNPFIDQ LYCGVTNTNF FRGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1489142154Putative transcription factor PCF6
5zkt_B3e-1489142154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01228.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892001e-143AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444521.10.0PREDICTED: transcription factor TCP1-like isoform X1
RefseqXP_018444522.10.0PREDICTED: transcription factor TCP1-like isoform X1
SwissprotQ9FYG71e-136TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A397YTL11e-180A0A397YTL1_BRACM; Uncharacterized protein
STRINGBra004097.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-117TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]