PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01180.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 279aa    MW: 30278.9 Da    PI: 8.0304
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01180.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-20138172135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Rsa1.0_01180.1_g00001.1 138 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 172
                              ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-18132184IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.943132168IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-13135174No hitNo description
Gene3DG3DSA:3.30.50.101.7E-16136172IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.17E-13137169No hitNo description
PfamPF003206.7E-18138172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440138163IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MQTPYNTSTQ GQYCHSCSMF HHHSQSCCYN NNNSNSNAGV YQHNGEGYYS ASVVDCTLSL  60
GTPSTRLCEE DEKRRRTASY GASSSISNFW ELLHTKNNNT KTTPSFDAPS FSTSNPIKPI  120
LGCSSIYGGG DSLLARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTTTASGN  180
AVVGASPVAG VPYGHHNAGY NNYNINPGNN NSGTSWAHHH TTQQRAPCNY PANEIRFMDD  240
YGSTGANNGD SDGSHGGVPF LSWRLNVADR ASLVHDFTI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (including its own promoter and GATA21 promoter), thus regulating the expression of genes mostly involved in hormone responses and floral organ specification (including genes regulating hormones responses) (PubMed:23335616, PubMed:26390296). Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:15367721, PubMed:23335616). Coregulates, with AGO10/PNH, the shoot apical meristem (SAM) organization. Regulates floral organ development via the promotion of JAG and NPR5/BOP2 expression. Modulates cytokinin homeostasis in organ boundaries by regulating CKX3 expression (PubMed:26390296). Involved in cell proliferation and differentiation (PubMed:15367721). Required to position the inductive proembryo boundary via the regulation of gene expression and for early embryonic development (PubMed:20643354). Together with GIF1/AN3, mediates cotyledon identity by preventing ectopic root formation through the repression of PLT1 expression (PubMed:22669825). {ECO:0000269|PubMed:15367721, ECO:0000269|PubMed:20643354, ECO:0000269|PubMed:22669825, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:26390296}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01180.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed via a negative regulatory feedback loop. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1895860.0GU189586.1 Brassica napus transcription factor-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482143.10.0PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC791e-139GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A3P5ZY791e-166A0A3P5ZY79_BRACM; Uncharacterized protein
TrEMBLM4D8S31e-166M4D8S3_BRARP; Uncharacterized protein
STRINGBra012883.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-118GATA family protein
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]