PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01157.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 386aa    MW: 42540.4 Da    PI: 6.7598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01157.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07191217430
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                              +h+ +Er RR++iN ++  L+el+P +
  Rsa1.0_01157.1_g00008.1 191 SHSLAERARREKINARMKLLQELVPGC 217
                              8************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-12185217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-5185279No hitNo description
PROSITE profilePS5088812.906187274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12191217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5191217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-6193280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-12253293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12253292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDLSRRFGAG SGGGVPFREA AALESLHLGG GDEFPQMVPP ENGGGFTALL ELPPTQAVEL  60
LHSSSSSSSQ ATSLHTLGAL AFPSNSVLME RAARFSVIAT EQQNQNGNVS GETPTTTTTS  120
SVPSNEHIKT EPAETETSDQ AAVEKQNNRC GKRKDFDKKA KGSSKKNKSS EENEKLPYVH  180
VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCDKG TYFGGKIKDQ RSKYVLWGPS  240
NWKLSMEAHK KVSDLQIQGT ALVLDEIINH VQSLQRQVEM LSMRLASVNP RIDFNLDTIL  300
SSENGSLMDG NFNGAAMQLA WPHQVMETEQ SYHHRQLQQP PPQQWPFDAL NQPVWGREED  360
QDHGNDHNSL MVGSASLHPN QVKMEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894691e-150AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139008.10.0PREDICTED: transcription factor bHLH60-like isoform X1
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLM4DDN50.0M4DDN5_BRARP; Uncharacterized protein
STRINGBra014603.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.11e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]