PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01112.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 313aa    MW: 35180.4 Da    PI: 8.8193
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01112.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30178236158
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                              ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp++++ tYeg+Hnh
  Rsa1.0_01112.1_g00020.1 178 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSILVATYEGTHNH 236
                              58***************************99**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-28171237IPR003657WRKY domain
SuperFamilySSF1182903.92E-25175237IPR003657WRKY domain
SMARTSM007744.7E-34178238IPR003657WRKY domain
PfamPF031061.3E-24179236IPR003657WRKY domain
PROSITE profilePS5081125.97180239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDCSSPLDIS LNLNTNPFDR SFPAKLPKEE IKVSTSAGVE RKWLVKDKSA SELREELNRV  60
NSENKKIKEM LATVYENYYA LHHHLEKLQS RKSPEIDHIE QPMKKTKQDP EEFLGFPNGL  120
SSGKTENSSS NQSHHYQQQH EQKNQLLFCK RPVTDSFNKA RVSTVYVPAD SSDTSLTVKD  180
GYQWRKYGQK VTRDNPSPRA YFRCSFAPSC PVKKKVQRSA EDPSILVATY EGTHNHLGPN  240
ASEGDATSQA GSSTVTLDMI HGGQKIGLEK NERRTMQEVL VQQMASSLTN DSNFTAALAT  300
AITGRLLMEQ SRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191802361974Probable WRKY transcription factor 4
2ayd_A8e-201782391474WRKY transcription factor 1
2lex_A1e-191802361974Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01112.1_g00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300670.0KF430067.1 Brassica rapa WRKY transcription factor 60 (WRKY60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447976.10.0PREDICTED: WRKY transcription factor 18-like
SwissprotQ9C5T41e-174WRK18_ARATH; WRKY transcription factor 18
TrEMBLA0A0D3BLX20.0A0A0D3BLX2_BRAOL; Uncharacterized protein
STRINGBo3g173640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-168WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Keates SE,Kostman TA,Anderson JD,Bailey BA
    Altered gene expression in three plant species in response to treatment with Nep1, a fungal protein that causes necrosis.
    Plant Physiol., 2003. 132(3): p. 1610-22
    [PMID:12857840]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Bülow L,Steffens NO,Galuschka C,Schindler M,Hehl R
    AthaMap: from in silico data to real transcription factor binding sites.
    In Silico Biol. (Gedrukt), 2006. 6(3): p. 243-52
    [PMID:16922688]
  4. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  6. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  7. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  8. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  9. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]
  10. Birkenbihl RP,Kracher B,Roccaro M,Somssich IE
    Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.
    Plant Cell, 2017. 29(1): p. 20-38
    [PMID:28011690]